Electroacupuncture reshapes gene and protein signals in rats with chronic atrophic gastritis
A rat study linked electroacupuncture at two acupoints to reduced gastric mucosal injury and altered expression of PDK4 and cell-cycle ...
Tag: Transcriptomics
Green sanitizer drives Listeria into a hidden viable but nonculturable state
RNA sequencing reveals that a gallic acid-based green sanitizer drives Listeria innocua into a viable but nonculturable state marked by ...
D-Cysteine Keeps Fresh-Cut Button Mushrooms White and Fresh by Triggering Internal Hydrogen Sulfide
A three-minute dip in dilute D-cysteine delayed browning and weight loss in fresh-cut button mushrooms by stimulating the tissue's own ...
Long-Read Transcriptomes Reveal Purifying Selection and Species-Linked Expression Shifts in Five Rosaceae Species
Researchers assembled long-read reference transcriptomes for five Spiraeeae species and found pervasive purifying selection on protein-coding sequences alongside species-associated expression ...
Kidney Co-Expression Map Uncovers Circadian and Metabolic Shifts Before Cysts Form
A cross-species co-expression analysis of Pkd1-mutant mouse kidneys found circadian, sterol and mitochondrial modules deregulated weeks before cysts appeared.
New Python package opens the recount3 RNA-seq data trove to machine learning workflows
A new Python package provides programmatic access to tens of thousands of uniformly processed RNA-seq samples from human and mouse ...
Heat stress genes and pathways mapped in mustard floral buds
Transcriptome analysis of heat-stressed Brassica juncea floral buds reveals stage-specific gene networks behind reproductive failure.
Wild and cultivated Cordyceps chanhua show distinct gene and metabolite patterns
A multi-omics study reveals that wild and cultivated Cordyceps chanhua differ markedly in gene expression, metabolite profiles, and gene-metabolite coordination ...
Land diets and warm water rewire gene activity in farmed gammarids
A new transcriptomic study shows that terrestrial diets shift fatty acid gene expression in Gammarus locusta, while warmer rearing temperatures ...
Tumor-Made Androgen Marks Breast Cancer Subtype and Survival Odds
Breast tumors with high intratumoral androstenedione show gene activity linked to lower proliferation, earlier stage and better survival, while low ...
Blood gene signatures reveal early immune shifts under linezolid tuberculosis therapy
Whole-blood transcriptomics in a randomized phase 2 trial sub-study found distinct early gene expression changes with linezolid-containing tuberculosis regimens and ...
Gene Signatures Linked to Resistance and Response to PD-1 Blockade in Skin Cancer
Pre-treatment gene signatures combining immune activity and tumor-intrinsic markers such as SLC7A5 and SOX2 are associated with response and resistance ...
Slime mold ribosomal DNA chromosome mapped from end to end
Ultra-deep long-read sequencing has delivered the first telomere-to-telomere sequence of the non-Mendelian ribosomal DNA chromosome of the slime mold Didymium ...
Hidden genes rewrite the family tree of Taiwan’s elusive forest herbs
Genomic analysis shows that two varieties of the forest herb Aspidistra daibuensis are not each other's closest relatives, prompting a ...
Root Chemistry Reveals How a Chinese Medicinal Herb Tolerates Cadmium
Researchers combined transcriptome sequencing and organic acid profiling in Ilex asprella roots to identify six cadmium-responsive organic acids and 15 ...
TDP-43 Overexpression in Human Cells Reproduces Key ALS Pathology and Gene Changes
Scientists built an inducible human cell line that overproduces TDP-43, triggering toxicity, mislocalization, and gene expression changes that overlap with ...
Yeast fermentation products rank first for boosting feed intake in cattle
A network meta-analysis ranked Saccharomyces cerevisiae fermentation products first among 22 interventions for increasing dry matter intake in cattle, with ...
Walnut Oil Buildup Traced to Rising Enzyme Activity and Coordinated Gene Expression
A study of the walnut cultivar 'Wen185' links S-shaped oil accumulation during kernel development to rising ACCase, FAS, and AAT ...
Research report: Transcriptome datasets of four freshwater bacterial isolates grown under iron-replete and iron-limited conditions
An open RNA-seq dataset from four freshwater bacterial isolates grown with and without iron documents 349,853,404 processed reads for comparative ...
Molecular tools and consumer taste converge to reshape semi-arid tomato breeding
A new review synthesises how genetic diversity, molecular markers, genome editing and consumer sensory preferences can be integrated to breed ...
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