Identifying colorectal cancer subtypes could lead to improved treatment decisions

LOS ANGELES – Colorectal cancer is the second leading cause of cancer death in the U.S., expected to cause about 51,000 deaths in 2019. But until now, it was unclear which drugs were most effective for which patients.

Researchers at the USC Norris Comprehensive Cancer Center found that identifying a metastatic colorectal cancer patient’s Consensus Molecular Subtype (CMS) could help oncologists determine the most effective course of treatment. CMS also had prognostic value, meaning each subgroup was indicative of a patient’s overall survival, regardless of therapy. The results are from the multi-center Phase III CALGB/SWOG 80405 trial and published in the Journal of Clinical Oncology.

CMS categorizes colorectal cancer into four distinct, biologically characterized subgroups based on how mutations in the tumor behave. The subgroups were created using data from several research teams around the world that had previously analyzed tumors of colorectal cancer patients who were treated with surgery and adjuvant chemotherapy. Although CMS classification is not based on clinical outcomes, there seemed to be patterns in how different subtypes responded to treatment.

“We wanted to understand the importance of CMS for patients with metastatic disease who are treated with the two most important first-line therapies,” says Heinz-Josef Lenz, MD, Professor of Medicine in the Division of Oncology at the Keck School of Medicine of USC and J. Terrence Lanni Chair in Gastrointestinal Cancer Research at USC Norris. Lenz was the lead author on the study. “We anticipated that CMS had prognostic value, but we were impressed at how strongly CMS was associated with outcomes.”

The study compared the efficacy of two different therapies (chemotherapy and cetuximab versus bevacizumab) on 581 metastatic colorectal cancer patients categorized by CMS. The data showed a strong association between a patient’s CMS subtype and both overall survival and progression-free survival. For example, patients in CMS2 had a median overall survival of 40 months compared to 15 months for patients in CMS1.

CMS also was predictive of overall survival among patients on either treatment, with patients in certain subtypes faring better on one therapy over the other. Survival for CMS1 patients on bevacizumab was twice that of those on cetuximab, whereas survival for CMS2 patients on cetuximab was six months longer than for bevacizumab.

“This study establishes the clinical utility of CMS in treating colorectal cancer,” Lenz says. “It also provides the basis for more research to uncover additional clinically significant predictive signatures within these subtypes that might better personalize patient care.”

Currently, it is not possible to order patient subtyping, though multiple efforts are underway to develop an assay approved for clinical use. Lenz estimates that this could happen in a matter of months. Until then, he and his colleagues continue to analyze data from more than 44,000 samples of blood, tissue and plasma in one of the largest, most comprehensive research efforts to characterize DNA, RNA and germline DNA in colon cancer. “This is only one study of many more to come that will help us understand this disease at the molecular level so we can provide better care for patients,” Lenz says.

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CALGB/SWOG 80405 is sponsored by the National Cancer Institute. Primary study contributors included teams led by Alan Venook, MD, from the University of California, San Francisco; Federico Innocenti, MD, PhD, from the University of North Carolina, Chapel Hill; Omar Kabbarah, PhD, from Genentech; and Fang-Shu Ou, PhD, from Alliance for Clinical Trials in Oncology at Mayo Clinic. Genentech also funded the study.

At USC Norris Comprehensive Cancer Center, more than 250 dedicated physicians and scientists are leading the fight to make cancer a disease of the past. As one of the eight original National Cancer Institute-designated Comprehensive Cancer Centers in the United States, USC Norris has revolutionized cancer research, treatment and prevention for more than 40 years. Multidisciplinary teams provide the latest research-based care at USC Norris Cancer Hospital, a 60-bed hospital, as well as outpatient clinics throughout Los Angeles and Orange counties.

In 2018-19, U.S. News & World Report ranked USC Norris Comprehensive Cancer Center among the country’s top 20 cancer care centers, and the highest-ranked in Southern California.

For more information, visit cancer.keckmedicine.org.

Founded in 1885, the Keck School of Medicine of USC is among the nation’s leaders in innovative patient care, scientific discovery, education and community service. The school has more than 1,850 full-time faculty members and voluntary faculty numbering more than 2,400 physicians. These faculty direct the education of approximately 800 medical students and 1,000 students pursuing graduate and postgraduate degrees. The school trains more than 900 resident physicians in more than 50 specialty or subspecialty programs and is the largest educator of physicians practicing in Southern California. Keck School faculty also lead research and education within 24 research-oriented basic science and clinical departments, and seven research institutes across the Health Sciences Campus.

The Keck School was ranked No. 30 in research in the 2020 U.S. News & World Report “Best Graduate Schools” rankings.

For more information, visit keck.usc.edu.