Space-Efficient Hash Table Enables Long Genomic K-Mer Counting in Memory
Computer scientists have developed a compact hash table called Kaarme that reduces genomic dictionary memory by up to five times ...
Tag: string algorithms
Prefix-Free Parsing Accelerates Genomic FM-Index Alignment Queries Across Repetitive Sequence Collections
Computer scientists have developed PFP-FM, an accelerated sequence-indexing method that combines prefix-free parsing with a two-level FM-index architecture to speed ...
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